Bio-informatics and Computational biology (Moved to Github)
Introduction
Resource
Genome browser
BLAST
Linux 下建立遠端 (local/terminal) 資料庫及 BLAST 操作
More operations on BLAST
Overlaps on sequence results from BLAST data
Human disease cancer as a result of aberrant proteins
PSI-BLAST
Multiple sequence alignment
MSA on Evolution
Operations on BlastP and ClusterW
Phylogeny tree construction
Entrez
EFetch with a Perl script
ESearch with a Perl script
ELink with a Perl script
Pattern Recognition
CAG repeat expansion : Huntington's disease
scanProsite : a pattern recognition tool
Protein Pattern Recognition Services
PCR : Amplifying DNA
DNA-binding residue prediction
DP-bind
ATP-binding residue prediction
TargetATPsite
RNA-binding residue prediction
BindN+
Phosphorylation site prediction
GPS2.0
Molecular Structure
Transcription start site prediction by identifying CpG islands
iron imbalance and the iron responsive element
NGS
Bowtie
Bowtie2 operation with RNA-seq data on windows
Bowtie2 with multiple hits
SAMtools
SAM files
NOISeq (Differential Expression in RNA-seq)
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Bowtie
Bowtie (Fast and sensitive read alignment)
Environment :
Bowtie2
Linux or Windows
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